* Version 4.3.10:
     * fix issue #70 a bug when hmmsearch fake jobs where not piped
* Version 4.3.9:
     * fix info file path in `run_sepp.sh` script
* Version 4.3.7:
     * Clean up run-sepp.sh to expose more options
     * Beginning steps for building more robust builds
* Version 4.3.6:
     * raise a ValueError if names of fragments to be inserted contain whitespace characters ' ' or '\t'.
* Version 4.3.5:
     * raise a ValueError if names of fragments to be inserted collide with names of reference sequences.
* Version 4.3.4:
     * Cleaning up the default (info) log  a bit
* Version 4.3.3:
     * avoid pipes for hmmsearch to deal with memory issues
     * Increase the default -F to 20000
* Version 4.3.2: more fixes to UPP
     * added a  seed number
     * Fixed PASTA alignment and tree file names
     * degap input files when already aligned
     * avoid checking file names twice
* Version 4.3.1: fixes to UPP
     * In the absence of fragments, outputs are generated in a consistent fashion
     * PASTA alignment and trees are given a name prefixed by the output prefix naem
* Version 4.3.0:
     * Added (Uyen Mai) an option -M and -S midpoint to break by midpoint and to stop by diameter
* Version 4.2.3:
     * Added a hard-coded --groups 10 to the pplacer runs to help with memory
* Version 4.2.2:
     * Add max chunk size
     * Fix logging messages
     * Fix a bug for the `-D` option after python 3 transition
     * Changed the pplacer step so that each run is on one fragment chunk (not all fragments), as specified using -F
* Version 4.2.1:
     * Fixed a bug with `run_tipp_tools.py` path
* Version 4.2.0:
     * Major change (trying again): TIPP should not include fragments that are fully unclassified in its profile. Fixed this
* Version 4.1.0:
     * Reduce verbosity by moving some logs from info to debug
* Verstion 4.0.1:
     * Small bug fixes in UPP after transition to python3
* Version 4.0.0
     * Several small bug fixes, including, the location of the config file for TIPP and UPP
     * Major change: TIPP should not include fragments that are fully unclassified in its profile. Fixed this
* Version 3.2.2:
     * Bug fix: check for info file for SEPP
* Version 3.2.1:
     * Can now handle internal node names
* Version 3.2.0:
     * Can now have a contained installation
* Version 3.1:
     * Bug fix for TIPP for python 3
* Version 3:0:
    * Moved to python3
* Version 1.1:
    * Added -d option for directories
    * Bundled all requied software
    * Changed installation so that dependencies are automatically installed
    * Moved to latest pplacer
    * Misc. bug fixes
